cleanUrl: "fetching-pdb-files-fast"
description: "URL만을 활용하여 빠르게 PDB 형식 문자열을 얻는 방법을 알아봅니다."

files.rcsb.org 이용

간단히 아래 URL에서 PDB_ID 부분만 원하는 PDB ID로 변경하면 된다. 끝!

<https://files.rcsb.org/download/[PDB_ID].pdb>

PDB 외 다른 형식의 파일을 얻으려면?

File Format Action Storage Compression Example URL
Biological Assembly File in PDB Download Uncompressed https://files.rcsb.org/download/1hh3.pdb1
Biological Assembly File in PDB Download Compressed https://files.rcsb.org/download/1hh3.pdb1.gz
Biological Assembly File in PDBx/mmCIF Download Uncompressed https://files.rcsb.org/download/5a9z-assembly1.cif
Biological Assembly File in PDBx/mmCIF Download Compressed https://files.rcsb.org/download/5a9z-assembly1.cif.gz
PDB Download Compressed https://files.rcsb.org/download/4hhb.pdb.gz
PDB Download Uncompressed https://files.rcsb.org/download/4hhb.pdb
PDBx/BinaryCIF Download Compressed https://models.rcsb.org/4hhb.bcif.gzhttps://models.rcsb.org/4hhb.bcif.gzhttps://models.rcsb.org/4hhb.bcif.gz
PDBx/BinaryCIF Download Uncompressed https://models.rcsb.org/4hhb.bcifhttps://models.rcsb.org/4hhb.bcifhttps://models.rcsb.org/4hhb.bcif
PDBx/mmCIF Download Compressed https://files.rcsb.org/download/4hhb.cif.gz
PDBx/mmCIF Download Uncompressed https://files.rcsb.org/download/4hhb.cif
XML Download Compressed https://files.rcsb.org/download/4hhb.xml.gz
XML Download Uncompressed https://files.rcsb.org/download/4hhb.xml
XML (header only) Download Compressed https://files.rcsb.org/download/4hhb-noatom.xml.gz
XML (header only) Download Uncompressed https://files.rcsb.org/download/4hhb-noatom.xml
Biological Assembly File in PDB View Uncompressed https://files.rcsb.org/view/1hh3.pdb1
Biological Assembly File in PDBx/mmCIF View Uncompressed https://files.rcsb.org/view/5a9z-assembly1.cif
PDB View Uncompressed https://files.rcsb.org/view/4hhb.pdb
PDB (header only) View Uncompressed https://files.rcsb.org/header/4hhb.pdb
PDBx/mmCIF View Uncompressed https://files.rcsb.org/view/4hhb.cif
PDBx/mmCIF (header only) View Uncompressed https://files.rcsb.org/header/4hhb.cif
XML (header only) View Uncompressed https://files.rcsb.org/view/4hhb-noatom.xml

Sequence 데이터를 FASTA 형식으로 얻을 수도 있다.

FASTA sequences per PDB entry Download Uncompressed https://www.rcsb.org/fasta/entry/4HHB/download
FASTA sequence per polymer entity (identified by <pdb_id>_<entity_id>) Download Uncompressed https://www.rcsb.org/fasta/entity/4HHB_1/download
FASTA sequence per polymer entity instance (chain) (identified by <pdb_id>.<asym_id>, please note this is the label_asym_id and not the author chain id) Download Uncompressed https://www.rcsb.org/fasta/chain/4HHB.A/download
Sequences in FASTA format for all entries in the PDB archive Download Compressed https://ftp.wwpdb.org/pub/pdb/derived_data/pdb_seqres.txt.gz

See also

https://www.rcsb.org/docs/programmatic-access/file-download-services