cleanUrl: "pisces"
description: "PDB 단백질 구조 데이터셋 구성을 쉽게 해주는 PISCES 서버 사용법을 정리합니다."
Sequence percentage identity | <= 30% |
---|---|
Sequence chain length | 40 ~ 10000 |
Resolution | 0.0 ~ 2.0 |
R-factor value | 0.25 |
X-ray entries | include |
EM entries | exclude |
NMR entries | exclude |
Allow chain breaks | yes |
Allow disorder | yes |
Print seqids | no |
→ 결과: 11,415개의 chain을 얻는다.
List of PDB chains
cullpdb_pc30.0_res0.0-2.0_len40-10000_R0.25_Xray_d2023_03_30_chains11415.fasta.txt
FASTA
cullpdb_pc30.0_res0.0-2.0_len40-10000_R0.25_Xray_d2023_03_30_chains11415.txt
Sequence percentage identity | <= 30% |
---|---|
Sequence chain length | 40 ~ 10000 |
Resolution | 0.0 ~ 1.0 |
R-factor value | 0.25 |
X-ray entries | include |
EM entries | exclude |
NMR entries | exclude |
Allow chain breaks | yes |
Allow disorder | yes |
Print seqids | no |
→ 결과: 351개의 chain을 얻는다.
List of PDB chains
cullpdb_pc30.0_res0.0-1.0_len40-10000_R0.25_Xray_d2023_03_30_chains351.txt
FASTA
cullpdb_pc30.0_res0.0-1.0_len40-10000_R0.25_Xray_d2023_03_30_chains351.fasta.txt
Sequence percentage identity | <= 30% |
---|---|
Sequence chain length | 40 ~ 10000 |
Resolution | 0.0 ~ 2.0 |
R-factor value | 0.25 |
X-ray entries | include |
EM entries | exclude |
NMR entries | exclude |
Allow chain breaks | no |
Allow disorder | yes |
Print seqids | no |
→ 결과: 9471개의 chain을 얻는다.