cleanUrl: "pysradb-quickstart"
description: "pysradb 사용법을 알아봅니다."

Version 1.0.1 기준.

• pysradb metadb 커맨드가 사라지고 모두 SRAweb 을 이용한다.

Installation

conda install -c bioconda pysradb

Quickstart

Fetch metadata with SRP ID

# Save manifest file as comma-separated values.
pysradb metadata --db OUTPUT_DIRECTORY/SRAmetadb.sqlite SRP012345 \\
--assay --desc --detailed --expand --saveto manifest.csv &&
sed -i 's/\\t/,/g' manifest.csv

Python API

from pysradb.sraweb import SRAweb

db = SRAweb()